- Engmann AK, Hatch JJ, Nanda P, Veeraraghavan P, Ozkan A, Poulopoulos A, Murphy AJ, Macklis JD. 2022. Neuronal subtype-specific growth cone and soma purification from mammalian CNS via fractionation and fluorescent sorting for subcellular analyses and spatial mapping of local transcriptomes and proteomes. Nature protocols. 17(2):222-251. PUBMED: 35022617 DOI:10.1038/S41596-021-00638-7
- Sahni V, Shnider SJ, Jabaudon D, Song JHT, Itoh Y, Greig LC, Macklis JD. 2021. Corticospinal neuron subpopulation-specific developmental genes prospectively indicate mature segmentally specific axon projection targeting. Cell reports. 37(3):109843. PUBMED: 34686320 DOI:10.1016/J.CELREP.2021.109843
- Sahni V, Itoh Y, Shnider SJ, Macklis JD. 2021. Crim1 and Kelch-like 14 exert complementary dual-directional developmental control over segmentally specific corticospinal axon projection targeting. Cell reports. 37(3):109842. PUBMED: 34686337 DOI:10.1016/J.CELREP.2021.109842
- Itoh Y, Sahni V, Shnider S, Macklis JD. 2021. Lumican regulates cervical corticospinal axon collateralization via non-autonomous crosstalk between distinct corticospinal neuron subpopulations. BioRxiv. DOI:10.1101/2021.03.26.437104
- Diaz JL, Siththanandan VB, Lu V, Gonzalez-Nava N, Pasquina L, MacDonald JL, Woodworth MB, Ozkan A, Nair R, He Z, Sahni V, Sarnow P, Palmer TD, Macklis JD, Tharin S. 2020. An evolutionarily acquired microRNA shapes development of mammalian cortical projections. Proceedings of the National Academy of Sciences of the United States of America. 117(46):29113-29122. PUBMED: 33139574 DOI:10.1073/PNAS.2006700117
- Poulopoulos A, Murphy AJ, Ozkan A, Davis P, Hatch J, Kirchner R, Macklis JD. 2019. Subcellular transcriptomes and proteomes of developing axon projections in the cerebral cortex. Nature. 565(7739):356-360. PUBMED: 30626971 DOI:10.1038/S41586-018-0847-Y
- Wuttke TV, Markopoulos F, Padmanabhan H, Wheeler AP, Murthy VN, Macklis JD. 2018. Developmentally primed cortical neurons maintain fidelity of differentiation and establish appropriate functional connectivity after transplantation. Nature neuroscience. 21(4):517-529. PUBMED: 29507412 DOI:10.1038/S41593-018-0098-0
- Shipman SL, Nivala J, Macklis JD, Church GM. 2017. CRISPR-Cas encoding of a digital movie into the genomes of a population of living bacteria. Nature. 547(7663):345-349. PUBMED: 28700573 DOI:10.1038/NATURE23017
- Shipman SL, Nivala J, Macklis JD, Church GM. 2016. Molecular recordings by directed CRISPR spacer acquisition. Science (New York, N.Y.). 353(6298):aaf1175. PUBMED: 27284167 DOI:AAF1175
- Galazo MJ, Emsley JG, Macklis JD. 2016. Corticothalamic Projection Neuron Development beyond Subtype Specification: Fog2 and Intersectional Controls Regulate Intraclass Neuronal Diversity. Neuron. 91(1):90-106. PUBMED: 27321927 DOI:S0896-6273(16)30203-3
- Greig LC, Woodworth MB, Greppi C, Macklis JD. 2016. Ctip1 Controls Acquisition of Sensory Area Identity and Establishment of Sensory Input Fields in the Developing Neocortex. Neuron. 90(2):261-77. PUBMED: 27100196 DOI:S0896-6273(16)00187-2
- Woodworth MB, Greig LC, Liu KX, Ippolito GC, Tucker HO, Macklis JD. 2016. Ctip1 Regulates the Balance between Specification of Distinct Projection Neuron Subtypes in Deep Cortical Layers. Cell rep. 2016 May 3;15(5):999-1012. PUBMED: 4873759 DOI: 10.1016/j.celrep.2016.03.064
- Greig LC, Woodworth MB, Galazo MJ, Padmanabhan H, Macklis JD. 2013. Molecular logic of neocortical projection neuron specification, development and diversity. Nature reviews. Neuroscience. 14(11):755-69. PUBMED: 24105342 DOI:10.1038/NRN3586
- Czupryn A, Zhou YD, Chen X, McNay D, Anderson MP, Flier JS, Macklis JD. 2011. Transplanted hypothalamic neurons restore leptin signaling and ameliorate obesity in db/db mice. Science (New York, N.Y.). 334(6059):1133-7. PUBMED: 22116886 DOI:10.1126/SCIENCE.1209870